API
====

Snps
-----

The SNP table is managed by the Snps class.

.. automodule:: baghera_tool.snps
    :members:
    :undoc-members:
    :show-inheritance:

Genes
------

The gene table is managed by the Genes class.

.. automodule:: baghera_tool.genes
    :members:
    :undoc-members:
    :show-inheritance:


Analysis
---------

Gene-level heritability
++++++++++++++++++++++++++++

All ananlysis functions are inside the `gene_regression.py` file

.. autofunction:: baghera_tool.gene_regression.analyse_normal

.. autofunction:: baghera_tool.gene_regression.analyse_gamma